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1

Deep Model Based Transfer and Multi-Task Learning for Biological Image Analysis

Zhang, Wenlu, Li, Rongjian, Zeng, Tao, Sun, Qian, Kumar, Sudhir, Ye, Jieping, Ji, Shuiwang

Journal:

IEEE Transactions on Big Data

Year:

2016

Language:

english

File:

PDF, 997 KB

english, 2016

2

Deep convolutional neural networks for multi-modality isointense infant brain image segmentation

Zhang, Wenlu, Li, Rongjian, Deng, Houtao, Wang, Li, Lin, Weili, Ji, Shuiwang, Shen, Dinggang

Journal:

Year:

2015

Language:

english

File:

PDF, 2.92 MB

english, 2015

3

A Probabilistic Latent Semantic Analysis Model for Coclustering the Mouse Brain Atlas

Ji, Shuiwang, Zhang, Wenlu, Li, Rongjian

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2013

Language:

english

File:

PDF, 1.40 MB

english, 2013

4

Long-term changes in nutrient concentrations of the Changjiang River and principal tributaries

Shuiwang Duan, Feng Xu, Li-Jun Wang

Journal:

Biogeochemistry

Year:

2007

Language:

english

File:

PDF, 951 KB

english, 2007

5

Evolutionary soft co-clustering: formulations, algorithms, and applications

Zhang, Wenlu, Li, Rongjian, Feng, Daming, Chernikov, Andrey, Chrisochoides, Nikos, Osgood, Christopher, Ji, Shuiwang

Journal:

Data Mining and Knowledge Discovery

Year:

2015

Language:

english

File:

PDF, 1.34 MB

english, 2015

6

Deep Learning Segmentation of Optical Microscopy Images Improves 3D Neuron Reconstruction

Li, Rongjian, Zeng, Tao, peng, Hanchuan, Ji, Shuiwang

Journal:

IEEE Transactions on Medical Imaging

Year:

2017

Language:

english

File:

PDF, 6.34 MB

english, 2017

7

Large-scale Exploration of Neuronal Morphologies Using Deep Learning and Augmented Reality

Li, Zhongyu, Butler, Erik, Li, Kang, Lu, Aidong, Ji, Shuiwang, Zhang, Shaoting

Journal:

Neuroinformatics

Year:

2018

Language:

english

File:

PDF, 1.84 MB

english, 2018

8

Mortality survey on HIV/AIDS-related deaths in HIV epidemic regions caused by contaminated plasma donation in central China

Li, Dongmin, Chen, Helen, Gao, Xin, Wang, Lu, Wang, Zhe, Cui, Zhaolin, Song, Luping, He, Wensheng, Wang, Shuiwang, Chen, Changkuan, Wang, Ning

Journal:

Year:

2010

Language:

english

File:

PDF, 140 KB

english, 2010

9

Drosophila Gene Expression Pattern Annotation through Multi-Instance Multi-Label Learning

. Ying-xin Li, . Shuiwang Ji, S. Kumar, . Jieping Ye, . Zhi-hua Zhou

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.52 MB

english, 2012

10

Quercetin promotes the osteogenic differentiation of rat mesenchymal stem cells via mitogen-activated protein kinase signaling

Li, Yang, Wang, Jiefang, Chen, Guangming, Feng, Shuiwang, Wang, Panpan, Zhu, Xiaofeng, Zhang, Ronghua

Journal:

Experimental and Therapeutic Medicine

Year:

2015

Language:

english

File:

PDF, 1.39 MB

english, 2015

11

[ACM Press the 22nd ACM SIGKDD International Conference - San Francisco, California, USA (2016.08.13-2016.08.17)] Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining - KDD '16 - Collaborative Multi-View Denoising

Zhang, Lei, Wang, Shupeng, Zhang, Xiaoyu, Wang, Yong, Li, Binbin, Shen, Dinggang, Ji, Shuiwang

Year:

2016

Language:

english

File:

PDF, 1.78 MB

english, 2016

12

A deep transfer learning approach for improved post-traumatic stress disorder diagnosis

Banerjee, Debrup, Islam, Kazi, Xue, Keyi, Mei, Gang, Xiao, Lemin, Zhang, Guangfan, Xu, Roger, Lei, Cai, Ji, Shuiwang, Li, Jiang

Journal:

Knowledge and Information Systems

Year:

2019

Language:

english

File:

PDF, 1.95 MB

english, 2019

13

Deep convolutional neural networks for annotating gene expression patterns in the mouse brain

Zeng, Tao, Li, Rongjian, Mukkamala, Ravi, Ye, Jieping, Ji, Shuiwang

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.75 MB

english, 2015

14

[IEEE 2011 Third Pacific-Asia Conference on Circuits, Communications and System (PACCS) - Wuhan, China (2011.07.17-2011.07.18)] 2011 Third Pacific-Asia Conference on Circuits, Communications and System (PACCS) - Recognition of On-Line Hand-Drawn Graphical Symbols Based on BP Neural Network

Li, Shuiwang, Ding, Liguo, Wei, Xiong

Year:

2011

Language:

english

File:

PDF, 244 KB

english, 2011

15

GnRH agonists induce endometrial epithelial cell apoptosis via GRP78 down-regulation

Weng, Huinan, Liu, Fenghua, Hu, Shuiwang, Li, Li, Wang, Yifeng

Journal:

Journal of Translational Medicine

Year:

2014

Language:

english

File:

PDF, 2.94 MB

english, 2014

16

An Improved AM–FM-Based Approach for Reconstructing Fingerprints from Minutiae

Li, Shuiwang, Zhao, Qijun, Fei, Xiangdong

Journal:

International Journal of Image and Graphics

Year:

2015

Language:

english

File:

PDF, 1.47 MB

english, 2015

17

[IEEE 2017 IEEE International Conference on Data Mining (ICDM) - New Orleans, LA (2017.11.18-2017.11.21)] 2017 IEEE International Conference on Data Mining (ICDM) - A Deep Transfer Learning Approach for Improved Post-Traumatic Stress Disorder Diagnosis

Banerjee, Debrup, Islam, Kazi, Mei, Gang, Xiao, Lemin, Zhang, Guangfan, Xu, Roger, Ji, Shuiwang, Li, Jiang

Year:

2017

Language:

english

File:

PDF, 944 KB

english, 2017

18

[IEEE 2017 IEEE Conference on Energy Internet and Energy System Integration (EI2) - Beijing (2017.11.26-2017.11.28)] 2017 IEEE Conference on Energy Internet and Energy System Integration (EI2) - Optimization of continental power exchange under the framework of global energy interconnection

Li, Pai, Huang, Yuehui, Wang, Weisheng, Zhang, Lin, Li, Shuiwang, Balzari, Luca

Year:

2017

Language:

english

File:

PDF, 481 KB

english, 2017

19

Three-dimensional protein shape similarity analysis based on hybrid features

Li, Zhong, Yu, Jiangjiang, Hu, Hailong, Ji, Shuiwang

Journal:

Year:

2018

Language:

english

File:

PDF, 4.05 MB

english, 2018

20

[ACM Press the 22nd ACM SIGKDD International Conference - San Francisco, California, USA (2016.08.13-2016.08.17)] Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining - KDD '16 - Parallel Lasso Screening for Big Data Optimization

Li, Qingyang, Qiu, Shuang, Ji, Shuiwang, Thompson, Paul M., Ye, Jieping, Wang, Jie

Year:

2016

Language:

english

File:

PDF, 1.03 MB

english, 2016

21

Prediction of overall survival after re-irradiation with stereotactic body radiation therapy for pancreatic cancer with a novel prognostic model (the SCAD score)

Zhu, Xiaofei, Li, Fuqi, Ju, Xiaoping, Shen, Yuxin, Cao, Yangsen, Cao, Fei, Fang, Fang, Qing, Shuiwang, Jia, Zhen, Zhang, Huojun

Journal:

Radiotherapy and Oncology

Year:

2018

Language:

english

File:

PDF, 536 KB

english, 2018

22

Long-Term Changes in Nutrient Concentrations of the Changjiang River and Principal Tributaries

Shuiwang Duan, Feng Xu and Li-Jun Wang

Journal:

Biogeochemistry

Year:

2007

Language:

english

File:

PDF, 2.87 MB

english, 2007

23

[IEEE 2015 International Conference on Biometrics (ICB) - Phuket, Thailand (2015.5.19-2015.5.22)] 2015 International Conference on Biometrics (ICB) - On the spatial inhomogeneity of fingerprint minutiae: A regression approach

Li, Shuiwang, Wang, Yi, Zhao, Qijun, Zhang, Yi

Year:

2015

Language:

english

File:

PDF, 2.50 MB

english, 2015

24

Hypermethylation of FOXD3 suppresses cell proliferation, invasion and metastasis in hepatocellular carcinoma

He, Guoyang, Hu, Shuiwang, Zhang, Dan, Wu, Pingxiang, Zhu, Xiaohui, Xin, Sainan, Lu, Guifeng, Liang, Li, Ding, Yanqing

Journal:

Experimental and Molecular Pathology

Year:

2015

Language:

english

File:

PDF, 1.52 MB

english, 2015

25

Sparsity Learning Formulations for Mining Time-Varying Data

Li, Rongjian, Zhang, Wenlu, Zhao, Yao, Zhu, Zhenfeng, Ji, Shuiwang

Journal:

IEEE Transactions on Knowledge and Data Engineering

Year:

2015

Language:

english

File:

PDF, 1017 KB

english, 2015

26

Prospective analysis of different combined regimens of stereotactic body radiation therapy and chemotherapy for locally advanced pancreatic cancer

Zhu, Xiaofei, Shi, Dongchen, Li, Fuqi, Ju, Xiaoping, Cao, Yangsen, Shen, Yuxin, Cao, Fei, Qing, Shuiwang, Fang, Fang, Jia, Zhen, Zhang, Huojun

Journal:

Cancer Medicine

Year:

2018

Language:

english

File:

PDF, 401 KB

english, 2018

27

Stereotactic body radiation therapy plus induction or adjuvant chemotherapy for early stage but medically inoperable pancreatic cancer: A propensity score-matched analysis of a prospectively collected database

Zhu, Xiaofei, Li, Fuqi, Liu, Wenyu, Shi, Dongchen, Ju, Xiaoping, Cao, Yangsen, Shen, Yuxin, Cao, Fei, Qing, Shuiwang, Fang, Fang, Jia, Zhen, Zhang, Huojun

Journal:

Cancer Management and Research

Year:

2018

Language:

english

File:

PDF, 488 KB

english, 2018

28

Feature extraction based on the fractional Fourier transform for vibration signals with application to measuring the load of a tumbling mill

Shi, Jianquan, Si, Gangquan, Li, Shuiwang, Oresanya, Babajide, Zhang, Yanbin

Journal:

Control Engineering Practice

Year:

2019

File:

PDF, 1.14 MB

2019

29

3D fingerprint modelling and synthesis

Zhao, Qijun, Long, Shuqin, Song, Wanzhong, Li, Shuiwang

Journal:

Electronics Letters

Year:

2015

Language:

english

File:

PDF, 396 KB

english, 2015

30

Health-related quality of life for gemcitabine and nab-paclitaxel plus radiotherapy versus gemcitabine and S-1 plus radiotherapy in patients with metastatic pancreatic cancer

Zhu, Xiaofei, Li, Fuqi, Shi, Dongchen, Ju, Xiaoping, Cao, Yangsen, Shen, Yuxin, Cao, Fei, Qing, Shuiwang, Fang, Fang, Jia, Zhen, Zhang, Huojun

Journal:

Cancer Management and Research

Year:

2018

Language:

english

File:

PDF, 644 KB

english, 2018

31

A bag-of-words approach forDrosophilagene expression pattern annotation

Shuiwang Ji, Ying-Xin Li, Zhi-Hua Zhou, Sudhir Kumar, Jieping Ye

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 6.09 MB

english, 2009

32

Prognostic role of stereotactic body radiation therapy for elderly patients with advanced and medically inoperable pancreatic cancer

Zhu, Xiaofei, Li, Fuqi, Ju, Xiaoping, Cao, Fei, Cao, Yangsen, Fang, Fang, Qing, Shuiwang, Shen, Yuxin, Jia, Zhen, Zhang, Huojun

Journal:

Cancer Medicine

Year:

2017

Language:

english

File:

PDF, 276 KB

english, 2017

33

Automated identification of cell-type-specific genes in the mouse brain by image computing of expression patterns

Rongjian Li,Wenlu Zhang,Shuiwang Ji

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 2.46 MB

english, 2014

34

[ACM Press the 15th ACM SIGKDD international conference - Paris, France (2009.06.28-2009.07.01)] Proceedings of the 15th ACM SIGKDD international conference on Knowledge discovery and data mining - KDD '09 - Drosophila gene expression pattern annotation using sparse features and term-term interactions

Ji, Shuiwang, Yuan, Lei, Li, Ying-Xin, Zhou, Zhi-Hua, Kumar, Sudhir, Ye, Jieping

Year:

2009

Language:

english

File:

PDF, 607 KB

english, 2009

35

The natural antisense transcript NATTD regulates the transcription of decapping scavenger (DcpS) enzyme

Mei, Zhu-Zhong, Sun, Hongwei, Ou, Xiaoli, Li, Lei, Cai, Junwei, Hu, Shuiwang, Wang, Juan, Luo, Haihua, Liu, Jinghua, Jiang, Yong

Journal:

The International Journal of Biochemistry & Cell Biology

Year:

2019

File:

PDF, 1.30 MB

2019

36

A mesh generation and machine learning framework forDrosophilagene expression pattern image analysis

Zhang, Wenlu, Feng, Daming, Li, Rongjian, Chernikov, Andrey, Chrisochoides, Nikos, Osgood, Christopher, Konikoff, Charlotte, Newfeld, Stuart, Kumar, Sudhir, Ji, Shuiwang

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 1.10 MB

english, 2013

37

[IEEE 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Shenzhen, China (2016.12.15-2016.12.18)] 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Deep convolutional neural networks for detecting secondary structures in protein density maps from cryo-electron microscopy

Li, Rongjian, Si, Dong, Zeng, Tao, Ji, Shuiwang, He, Jing

Year:

2016

Language:

english

File:

PDF, 1.36 MB

english, 2016

38

A Robust Deep Model for Improved Classification of AD/MCI Patients

Li, Feng, Tran, Loc, Thung, Kim-Han, Ji, Shuiwang, Shen, Dinggang, Li, Jiang

Journal:

IEEE Journal of Biomedical and Health Informatics

Year:

2015

Language:

english

File:

PDF, 293 KB

english, 2015

39

[ACM Press the 14th ACM SIGKDD international conference - Las Vegas, Nevada, USA (2008.08.24-2008.08.27)] Proceeding of the 14th ACM SIGKDD international conference on Knowledge discovery and data mining - KDD 08 - Learning subspace kernels for classification

Chen, Jianhui, Ji, Shuiwang, Ceran, Betul, Li, Qi, Wu, Mingrui, Ye, Jieping

Year:

2008

Language:

english

File:

PDF, 275 KB

english, 2008

40

[ACM Press the 21th ACM SIGKDD International Conference - Sydney, NSW, Australia (2015.08.10-2015.08.13)] Proceedings of the 21th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining - KDD '15 - Deep Model Based Transfer and Multi-Task Learning for Biological Image Analysis

Zhang, Wenlu, Li, Rongjian, Zeng, Tao, Sun, Qian, Kumar, Sudhir, Ye, Jieping, Ji, Shuiwang

Year:

2015

Language:

english

File:

PDF, 882 KB

english, 2015

41

Down-regulation of ABCG2 and ABCB4 transporters in the placenta of rats exposed to cadmium

Liu, Lili, Zhou, Liang, Hu, Shuiwang, Zhou, Shanyu, Deng, Yingyu, Dong, Ming, Huang, Jianxun, Zeng, Yuli, Chen, Xiaoyan, Zhao, Na, Li, Hongling, Ding, Zhenhua

Journal:

Year:

2016

File:

PDF, 2.17 MB

2016

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